STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS38872.1Predicted arabinose efflux permease, MFS family. (444 aa)    
Predicted Functional Partners:
SIS39699.1
Major Facilitator Superfamily protein.
 
  
 0.899
SIS83724.1
Membrane fusion protein, multidrug efflux system.
 
 
 0.859
SIS39711.1
Major Facilitator Superfamily protein.
  
     0.757
SIT20774.1
Yersiniabactin nonribosomal peptide/polyketide synthase.
  
 
 0.664
SIS38863.1
DNA-binding transcriptional regulator, MerR family.
 
   
 0.642
SIT07141.1
Amino acid adenylation domain-containing protein.
    
 0.484
SIT07166.1
Yersiniabactin nonribosomal peptide/polyketide synthase.
    
 0.484
SIT20766.1
Phosphopantetheine attachment site.
    
 0.484
SIT00488.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.459
SIS36872.1
Anthranilate synthase, component I.
    
 0.454
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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