STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS49349.1LPS-assembly lipoprotein. (190 aa)    
Predicted Functional Partners:
SIS49335.1
DNA polymerase III, delta subunit.
 
    0.908
SIS49378.1
Protein of unknown function.
 
     0.890
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
       0.845
SIS55326.1
Lipopolysaccharide export system protein LptC.
  
     0.733
bamB
Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.656
SIT06309.1
Hypothetical protein.
  
     0.644
SIS39114.1
Beta-barrel assembly machine subunit BamE.
  
     0.641
SIT11080.1
Beta-barrel assembly machine subunit BamF.
  
     0.629
SIS55357.1
Lipopolysaccharide export system protein LptA.
  
     0.615
SIS53972.1
Uncharacterized SAM-binding protein YcdF, DUF218 family.
  
     0.603
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.