Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SIS39658.1 | secA | SAMN05421779_101521 | SAMN05421779_102511 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.992 |
| SIS39658.1 | secB | SAMN05421779_101521 | SAMN05421779_102161 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit secB; One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | 0.865 |
| SIS39658.1 | secD | SAMN05421779_101521 | SAMN05421779_101654 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Preprotein translocase subunit SecD/SecD/SecF fusion protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. | 0.990 |
| SIS39658.1 | secE | SAMN05421779_101521 | SAMN05421779_102666 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation. | 0.998 |
| SIS39658.1 | secY | SAMN05421779_101521 | SAMN05421779_102699 | Protein translocase subunit secG; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.993 |
| SIS41849.1 | ftsZ | SAMN05421779_101727 | SAMN05421779_103458 | Outer membrane protein OmpA. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.579 |
| SIS41849.1 | secA | SAMN05421779_101727 | SAMN05421779_102511 | Outer membrane protein OmpA. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.948 |
| SIS41849.1 | secY | SAMN05421779_101727 | SAMN05421779_102699 | Outer membrane protein OmpA. | Protein translocase subunit secY/sec61 alpha; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.768 |
| SIT07141.1 | SIT07166.1 | SAMN05421779_106159 | SAMN05421779_106161 | Amino acid adenylation domain-containing protein. | Yersiniabactin nonribosomal peptide/polyketide synthase. | 0.999 |
| SIT07141.1 | SIT20766.1 | SAMN05421779_106159 | SAMN05421779_1161 | Amino acid adenylation domain-containing protein. | Phosphopantetheine attachment site. | 0.999 |
| SIT07141.1 | ftsZ | SAMN05421779_106159 | SAMN05421779_103458 | Amino acid adenylation domain-containing protein. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.553 |
| SIT07141.1 | secA | SAMN05421779_106159 | SAMN05421779_102511 | Amino acid adenylation domain-containing protein. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.932 |
| SIT07166.1 | SIT07141.1 | SAMN05421779_106161 | SAMN05421779_106159 | Yersiniabactin nonribosomal peptide/polyketide synthase. | Amino acid adenylation domain-containing protein. | 0.999 |
| SIT07166.1 | SIT20766.1 | SAMN05421779_106161 | SAMN05421779_1161 | Yersiniabactin nonribosomal peptide/polyketide synthase. | Phosphopantetheine attachment site. | 0.999 |
| SIT07166.1 | ftsZ | SAMN05421779_106161 | SAMN05421779_103458 | Yersiniabactin nonribosomal peptide/polyketide synthase. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.553 |
| SIT07166.1 | secA | SAMN05421779_106161 | SAMN05421779_102511 | Yersiniabactin nonribosomal peptide/polyketide synthase. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.932 |
| SIT20766.1 | SIT07141.1 | SAMN05421779_1161 | SAMN05421779_106159 | Phosphopantetheine attachment site. | Amino acid adenylation domain-containing protein. | 0.999 |
| SIT20766.1 | SIT07166.1 | SAMN05421779_1161 | SAMN05421779_106161 | Phosphopantetheine attachment site. | Yersiniabactin nonribosomal peptide/polyketide synthase. | 0.999 |
| SIT20766.1 | ftsZ | SAMN05421779_1161 | SAMN05421779_103458 | Phosphopantetheine attachment site. | Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. | 0.553 |
| SIT20766.1 | secA | SAMN05421779_1161 | SAMN05421779_102511 | Phosphopantetheine attachment site. | Protein translocase subunit secA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. | 0.932 |
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