STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS69328.1Uncharacterized membrane protein YccC. (712 aa)    
Predicted Functional Partners:
SIS69286.1
RND family efflux transporter, MFP subunit.
  
 0.962
SIS69266.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
   
 0.816
SIS69307.1
Protein of unknown function.
       0.787
SIS69346.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
     0.773
SIS86686.1
Predicted arabinose efflux permease, MFS family.
  
  
 0.720
SIS37899.1
Nitrogen fixation protein NifQ.
  
    0.704
pheT
phenylalanyl-tRNA synthetase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
    
   0.693
SIT13814.1
Predicted arabinose efflux permease, MFS family.
  
  
 0.690
SIS38793.1
Modular FeS cluster scaffolding protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
    0.673
SIS37552.1
NifU homolog involved in Fe-S cluster formation.
   
    0.664
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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