Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SIS71805.1 | SIS85957.1 | SAMN05421779_103259 | SAMN05421779_104148 | Dihydroorotase. | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | 0.946 |
SIS71805.1 | SIS97127.1 | SAMN05421779_103259 | SAMN05421779_10587 | Dihydroorotase. | Dihydroorotase. | 0.856 |
SIS71805.1 | SIT01152.1 | SAMN05421779_103259 | SAMN05421779_105333 | Dihydroorotase. | Uracil permease. | 0.850 |
SIS71805.1 | SIT05011.1 | SAMN05421779_103259 | SAMN05421779_10626 | Dihydroorotase. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.916 |
SIS71805.1 | carA | SAMN05421779_103259 | SAMN05421779_10766 | Dihydroorotase. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.989 |
SIS71805.1 | carB | SAMN05421779_103259 | SAMN05421779_10767 | Dihydroorotase. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.989 |
SIS71805.1 | pyrB | SAMN05421779_103259 | SAMN05421779_10588 | Dihydroorotase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.999 |
SIS71805.1 | pyrD | SAMN05421779_103259 | SAMN05421779_101185 | Dihydroorotase. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.975 |
SIS71805.1 | pyrE | SAMN05421779_103259 | SAMN05421779_11420 | Dihydroorotase. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.908 |
SIS71805.1 | pyrF | SAMN05421779_103259 | SAMN05421779_102495 | Dihydroorotase. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.855 |
SIS85957.1 | SIS71805.1 | SAMN05421779_104148 | SAMN05421779_103259 | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | Dihydroorotase. | 0.946 |
SIS85957.1 | SIS97127.1 | SAMN05421779_104148 | SAMN05421779_10587 | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | Dihydroorotase. | 0.951 |
SIS85957.1 | SIT01152.1 | SAMN05421779_104148 | SAMN05421779_105333 | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | Uracil permease. | 0.869 |
SIS85957.1 | carA | SAMN05421779_104148 | SAMN05421779_10766 | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | Carbamoyl-phosphate synthase small subunit; Belongs to the CarA family. | 0.934 |
SIS85957.1 | carB | SAMN05421779_104148 | SAMN05421779_10767 | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | Carbamoyl-phosphate synthase large subunit; Belongs to the CarB family. | 0.984 |
SIS85957.1 | pyrB | SAMN05421779_104148 | SAMN05421779_10588 | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.928 |
SIS85957.1 | pyrD | SAMN05421779_104148 | SAMN05421779_101185 | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | Dihydroorotate oxidase A; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. | 0.761 |
SIS85957.1 | pyrE | SAMN05421779_104148 | SAMN05421779_11420 | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP). | 0.976 |
SIS85957.1 | pyrF | SAMN05421779_104148 | SAMN05421779_102495 | Dihydropyrimidine dehydrogenase (NAD+) subunit PreA. | Orotidine-5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily. | 0.924 |
SIS97127.1 | SIS71805.1 | SAMN05421779_10587 | SAMN05421779_103259 | Dihydroorotase. | Dihydroorotase. | 0.856 |
page 1 of 6