STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS88762.1DNA-binding transcriptional regulator, MarR family. (157 aa)    
Predicted Functional Partners:
SIT20774.1
Yersiniabactin nonribosomal peptide/polyketide synthase.
  
 
 0.533
SIS86837.1
Diheme cytochrome SoxA (sulfur oxidation).
  
  
  0.506
SIS69991.1
Catechol 2,3-dioxygenase.
 
  
 0.492
SIT17572.1
Amino acid/amide ABC transporter membrane protein 1, HAAT family /amino acid/amide ABC transporter membrane protein 2, HAAT family; Belongs to the binding-protein-dependent transport system permease family.
 
     0.491
SIT14672.1
Transcriptional regulator, MarR family.
  
     0.473
SIS40895.1
DMSO/TMAO reductase YedYZ, molybdopterin-dependent catalytic subunit.
  
  
  0.466
SIS86779.1
Sulfur-oxidizing protein SoxX.
  
  
  0.465
SIS86796.1
Sulfur-oxidizing protein SoxY.
  
  
  0.444
SIS67060.1
Transcriptional regulator, IclR family.
  
 
 0.432
SIS38633.1
Riboflavin synthase alpha chain.
    
 0.430
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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