STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS91592.1Transcriptional regulator, PaaX family. (320 aa)    
Predicted Functional Partners:
SIS91706.1
acyl-CoA thioesterase.
 
   
 0.829
SIS91616.1
CDP-4-dehydro-6-deoxyglucose reductase.
 
   
 0.816
SIS91575.1
Transcriptional regulator, IclR family.
 
  
 0.807
SIS97221.1
Phenylacetic acid degradation protein.
  
 0.781
SIS91653.1
Phenylacetic acid degradation protein paaN.
  
   
 0.749
SIS91724.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
   
 0.739
SIS91672.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
   
 0.686
cobB
NAD-dependent deacetylase; Belongs to the sirtuin family. Class III subfamily.
   
    0.672
SIT20306.1
Hypothetical protein.
  
     0.598
SIS71886.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
   
    0.582
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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