STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS84935.1CRISPR-associated protein, Cse4 family. (343 aa)    
Predicted Functional Partners:
SIS84909.1
CRISPR-associated protein, Cas5e family.
 
 
 0.999
SIS84997.1
CRISPR-associated protein, Cse1 family.
 
 
 0.999
SIS84954.1
CRISPR-associated protein, Cse3 family.
 
 
 0.998
SIS84973.1
CRISPR-associated protein, Cse2 family.
  
 
 0.996
SIS85015.1
CRISPR-associated helicase, Cas3 family.
 
 
 0.994
cas1
CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
  
 0.980
SIT00211.1
CRISPR-associated helicase, Cas3 family.
  
 
 0.934
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
   
  
 0.652
SIS41607.1
CRISP-associated protein Cas1.
  
  
 0.514
SIS41618.1
CRISP-associated protein Cas1.
  
  
 0.468
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.