STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIS96381.15-carboxy-2-oxohept-3-enedioate decarboxylase HpaG2 subunit. (253 aa)    
Predicted Functional Partners:
SIS96330.1
5-carboxymethyl-2-hydroxymuconate delta isomerase.
 
 
 0.937
SIS96396.1
5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase / 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase.
 
  
 
0.936
SIS96346.1
3,4-dihydroxyphenylacetate 2,3-dioxygenase.
 
  
 0.881
SIS96309.1
2-oxohept-3-enedioate hydratase.
 
 
 0.874
SIS96362.1
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
 
 
 0.817
SIS95867.1
2-keto-4-pentenoate hydratase.
  
 
 0.701
SIS99633.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.673
SIS36471.1
D-lactate dehydrogenase.
  
 
 0.672
SIT19219.1
5-carboxymethyl-2-hydroxymuconate isomerase.
  
 
 0.643
SIS96414.1
TRAP transporter, DctM subunit.
       0.627
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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