STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT07070.1HlyD family secretion protein. (322 aa)    
Predicted Functional Partners:
SIT07058.1
ABC-2 type transport system ATP-binding protein.
  
 0.965
SIT07043.1
ABC-2 type transport system permease protein.
 
  
 0.954
macB
Macrolide transport system ATP-binding/permease protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.905
SIS99368.1
Efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family.
 
 0.870
SIS88260.1
Outer membrane protein, multidrug efflux system.
 
 0.868
SIS42041.1
Outer membrane protein.
  
 0.867
SIS42314.1
ATP-binding cassette, subfamily C, LapB.
  
 0.854
SIS79036.1
ATP-binding cassette, subfamily C, LapB.
  
 0.854
SIS79053.1
ATP-binding cassette, subfamily C/ATP-binding cassette, subfamily C, LapB.
  
 0.854
SIT08485.1
ATP-binding cassette, subfamily B.
  
 0.854
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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