STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT04980.1Anaerobic C4-dicarboxylate transporter DcuB; Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane; Belongs to the DcuA/DcuB transporter (TC 2.A.13.1) family. (447 aa)    
Predicted Functional Partners:
SIS99633.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.793
SIS36557.1
Aspartate ammonia-lyase.
 
  
 0.774
SIT18355.1
Putative transport protein.
  
     0.613
SIS76106.1
L-asparaginase; Belongs to the asparaginase 1 family.
 
  
 0.574
SIS37580.1
Succinate dehydrogenase subunit D.
 
    0.518
SIS37584.1
Fumarate reductase subunit C.
 
    0.506
SIT04900.1
Hypothetical protein.
       0.453
SIT04914.1
His-Xaa-Ser system protein HxsD.
       0.453
SIT04936.1
His-Xaa-Ser system radical SAM maturase HxsB.
       0.453
SIT04954.1
His-Xaa-Ser system radical SAM maturase HxsC.
       0.453
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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