STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT08641.1Site-specific DNA recombinase. (196 aa)    
Predicted Functional Partners:
SIS76267.1
Phage protein U.
   
  
 0.803
SIS76613.1
Phage portal protein, HK97 family.
   
    0.733
SIS84808.1
Site-specific DNA recombinase.
  
     0.629
SIT08656.1
Hypothetical protein.
       0.522
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
    0.511
SIS51621.1
Transposase InsO and inactivated derivatives.
 
   
 0.454
SIS76222.1
Hypothetical protein.
   
  
 0.454
SIT08608.1
Phage integrase family protein.
 
  
 0.449
SIS76467.1
Hypothetical protein.
   
  
 0.443
SIS76485.1
Phage baseplate assembly protein V.
   
  
 0.442
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.