STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT11975.1Ala-tRNA(Pro) hydrolase. (167 aa)    
Predicted Functional Partners:
SIT11962.1
D-lactate dehydrogenase (cytochrome).
 
     0.821
SIT11988.1
Protein of unknown function.
       0.773
SIT12003.1
Hypothetical protein.
       0.506
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 
 0.478
SIS39123.1
Cytochrome b pre-mRNA-processing protein 3.
  
     0.445
SIT12015.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
       0.440
SIS47155.1
Hypothetical protein; Belongs to the UPF0434 family.
 
     0.422
SIS47166.1
DUF971 family protein.
 
     0.416
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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