STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT15028.1Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains. (650 aa)    
Predicted Functional Partners:
SIT18407.1
Capsular exopolysaccharide family.
 
   
 0.563
purU
Formyltetrahydrofolate deformylase; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).
       0.515
SIT20774.1
Yersiniabactin nonribosomal peptide/polyketide synthase.
     
 0.488
SIT01395.1
Endonuclease YncB, thermonuclease family.
   
  
 0.437
SIS47198.1
Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains.
  
     0.430
SIS99303.1
Two-component system, OmpR family, sensor kinase.
   
  
 0.420
SIT14841.1
Two-component system, OmpR family, sensor histidine kinase ChvG.
   
  
 0.420
SIS49409.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.401
SIS88113.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.401
SIT18555.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
    0.401
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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