STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT13704.1Type IV secretory pathway, VirD2 components (relaxase). (672 aa)    
Predicted Functional Partners:
SIT13651.1
Conjugative transfer signal peptidase TraF.
     0.934
SIT13605.1
Plasmid segregation oscillating ATPase ParF.
     0.919
SIT13667.1
Uncharacterized conserved protein, DUF736 family.
 
     0.876
SIT13575.1
Helix-turn-helix domain-containing protein.
 
     0.864
SIT13590.1
Plasmid replication initiator protein.
 
     0.863
SIT13636.1
Protein of unknown function.
 
     0.863
SIT13620.1
Plasmid segregation centromere-binding protein ParG.
 
     0.859
SIT13684.1
Transglycosylase SLT domain-containing protein.
   
 0.816
SIT14015.1
Type IV secretion system protein VirD4.
 
   
 0.815
SIT14031.1
Ribbon-helix-helix protein, copG family.
 
     0.801
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.