STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SIT18585.1tRNA1(Val) A37 N6-methylase TrmN6; Belongs to the methyltransferase superfamily. (471 aa)    
Predicted Functional Partners:
rsmI
16S rRNA (cytidine1402-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
  
  
 0.719
SIS37589.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
   0.601
SIS75230.1
Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
   
   0.601
SIT18594.1
Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
       0.594
SIS71047.1
Pyruvate phosphate dikinase; Belongs to the PEP-utilizing enzyme family.
    
  0.524
SIS41516.1
DNA polymerase III, delta prime subunit.
 
    0.523
SIT10991.1
Methyltransferase domain-containing protein.
 
   
 0.511
SIT18574.1
Hypothetical protein.
       0.497
SIT12092.1
[LSU ribosomal protein L11P]-lysine N-methyltransferase.
 
     0.468
SIT20774.1
Yersiniabactin nonribosomal peptide/polyketide synthase.
     
 0.443
Your Current Organism:
Insolitispirillum peregrinum
NCBI taxonomy Id: 80876
Other names: ATCC 15387, Aquaspirillum peregrinum, CCUG 13795, I. peregrinum, IFO 14922, JCM 21450, LMG 4340, LMG:4340, NBRC 14922, Spirillum peregrinum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.