Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
als2Alsin Rho guanine nucleotide exchange factor ALS2 b. (1522 aa)    
Predicted Functional Partners:
cfap410
Cilia and flagella associated protein 410.
   
 
 0.951
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
   
 
 0.889
c9orf72
Zgc:100846.
      
 0.863
LOC101158703
Uncharacterized protein.
    
 0.830
LOC101168567
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.830
LOC101174364
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.830
LOC101160447
RAN binding protein 2.
   
 0.811
LOC101175237
Rho guanine nucleotide exchange factor (GEF) 16.
      
 0.759
rab5c
RAB5C, member RAS oncogene family.
    
 0.748
LOC101159835
RAB5A, member RAS oncogene family, a.
    
 0.748
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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