Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101156553Uncharacterized protein. (142 aa)    
Predicted Functional Partners:
morn5
MORN repeat containing 5.
      
 0.691
LOC101170553
NME/NM23 family member 8; Belongs to the NDK family.
    
 
 0.652
pacrg
PARK2 co-regulated.
   
 
 0.587
MFAP3
Microfibril associated protein 3.
      
 0.566
LOC101158703
Uncharacterized protein.
    
 0.550
LOC101168567
RAB guanine nucleotide exchange factor (GEF) 1.
    
 0.550
LOC101174364
RAB guanine nucleotide exchange factor (GEF) 1, like.
    
 0.550
Wdr90
WD_REPEATS_REGION domain-containing protein.
    
 0.528
ENSORLP00000042816
Uncharacterized protein.
    
 0.528
myo3a
Myosin IIIA; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.
   
 
 0.525
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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