LOC101171058 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC101171058

Uncharacterized protein. (566 aa)

Predicted Functional Partners:

ncor1

0.556

ncor2

0.551

LOC101157676

0.501

GJC1

0.501

H2LI61_ORYLA

0.501

LOC101167824

0.501

BAZ2B

0.501

LOC101172397

0.501

gtf2f2

0.500

LOC101154818

0.500

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BAZ2B	GJC1	ENSORLP00000029161	ENSORLP00000003799	Bromodomain adjacent to zinc finger domain 2B.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.501
BAZ2B	H2LI61_ORYLA	ENSORLP00000029161	ENSORLP00000005681	Bromodomain adjacent to zinc finger domain 2B.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.501
BAZ2B	LOC101154818	ENSORLP00000029161	ENSORLP00000018418	Bromodomain adjacent to zinc finger domain 2B.	Insulin-like growth factor binding protein 2b.	0.500
BAZ2B	LOC101157676	ENSORLP00000029161	ENSORLP00000002735	Bromodomain adjacent to zinc finger domain 2B.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.501
BAZ2B	LOC101167824	ENSORLP00000029161	ENSORLP00000026598	Bromodomain adjacent to zinc finger domain 2B.	Zgc:171558.	0.500
BAZ2B	LOC101171058	ENSORLP00000029161	ENSORLP00000000058	Bromodomain adjacent to zinc finger domain 2B.	Uncharacterized protein.	0.501
BAZ2B	LOC101172397	ENSORLP00000029161	ENSORLP00000033443	Bromodomain adjacent to zinc finger domain 2B.	Neuropilin; Belongs to the neuropilin family.	0.501
BAZ2B	gtf2f2	ENSORLP00000029161	ENSORLP00000005440	Bromodomain adjacent to zinc finger domain 2B.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.499
GJC1	BAZ2B	ENSORLP00000003799	ENSORLP00000029161	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Bromodomain adjacent to zinc finger domain 2B.	0.501
GJC1	H2LI61_ORYLA	ENSORLP00000003799	ENSORLP00000005681	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.902
GJC1	LOC101154818	ENSORLP00000003799	ENSORLP00000018418	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Insulin-like growth factor binding protein 2b.	0.509
GJC1	LOC101157676	ENSORLP00000003799	ENSORLP00000002735	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.903
GJC1	LOC101167824	ENSORLP00000003799	ENSORLP00000026598	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Zgc:171558.	0.511
GJC1	LOC101171058	ENSORLP00000003799	ENSORLP00000000058	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Uncharacterized protein.	0.501
GJC1	LOC101172397	ENSORLP00000003799	ENSORLP00000033443	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Neuropilin; Belongs to the neuropilin family.	0.510
GJC1	gtf2f2	ENSORLP00000003799	ENSORLP00000005440	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	General transcription factor IIF subunit 2; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. This subunit shows ATP-dependent DNA-helicase activity.	0.500
H2LI61_ORYLA	BAZ2B	ENSORLP00000005681	ENSORLP00000029161	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Bromodomain adjacent to zinc finger domain 2B.	0.501
H2LI61_ORYLA	GJC1	ENSORLP00000005681	ENSORLP00000003799	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.902
H2LI61_ORYLA	LOC101154818	ENSORLP00000005681	ENSORLP00000018418	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Insulin-like growth factor binding protein 2b.	0.510
H2LI61_ORYLA	LOC101157676	ENSORLP00000005681	ENSORLP00000002735	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	Gap junction protein; One gap junction consists of a cluster of closely packed pairs of transmembrane channels, the connexons, through which materials of low MW diffuse from one cell to a neighboring cell.	0.902