STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRC3Leucine rich repeat containing 3. (259 aa)    
Predicted Functional Partners:
trmt13
tRNA methyltransferase 13 homolog.
      
 0.593
c5h12orf10
Melanocyte proliferating gene 1.
      
 0.584
rtca
RNA 3'-terminal phosphate cyclase.
    
 
 0.536
LOC101154936
SAS-6 centriolar assembly protein.
     
 0.512
noc4l
Nucleolar complex associated 4 homolog.
      
 0.511
lrrc39
Leucine rich repeat containing 39.
    
 0.510
DPY19L4
Dpy-19 like 4.
      
 0.508
LOC101163333
Hyaluronan binding protein 4.
      
 0.504
LOC101162281
Immunoglobulin superfamily, member 8.
      
 0.496
ccnq
Cyclin Q; Belongs to the cyclin family.
      
 0.496
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.