Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
H2L2W9_ORYLAUncharacterized protein. (391 aa)    
Predicted Functional Partners:
ENSORLP00000042330
Uncharacterized protein.
 
      0.810
LOC101172910
Integrin_alpha2 domain-containing protein; Belongs to the integrin alpha chain family.
    
 0.618
cables1
Cdk5 and Abl enzyme substrate 1.
      
 0.618
ADAM11
ADAM metallopeptidase domain 11.
     
 0.617
LOC101173732
Voltage-dependent anion channel 2.
      
 0.610
VDAC2
Voltage dependent anion channel 2.
      
 0.610
LOC101167322
Integrin, alpha 6b; Belongs to the integrin alpha chain family.
    
 0.524
LOC101163361
NDRG family member 2.
      
 0.510
GFI1
Growth factor independent 1 transcriptional repressor.
    
 0.508
gfi1
Growth factor independent 1A transcription repressor b.
    
 0.507
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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