Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101159803Ankyrin repeat and BTB (POZ) domain containing 2a. (1017 aa)    
Predicted Functional Partners:
ckap5
Cytoskeleton associated protein 5.
      
 0.600
ric8b
RIC8 guanine nucleotide exchange factor B.
      
 0.547
ubxn7
UBX domain protein 7.
    
 0.545
mrpl47
Mitochondrial ribosomal protein L47.
      
 0.508
itfg1
Integrin alpha FG-GAP repeat containing 1.
      
 0.504
LOC101172920
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.499
CUL3
Cullin 3; Belongs to the cullin family.
    
 0.499
slc35e3
Solute carrier family 35 member E3.
      
 0.494
bbs9
Bardet-Biedl syndrome 9.
    
 0.487
UPF1
UPF1 RNA helicase and ATPase.
    
 
 0.479
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.