LOC101163644 protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC101163644

Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily. (388 aa)

Predicted Functional Partners:

LOC101155859

0.989

LOC101175345

0.989

dvl3

0.967

dvl2

0.967

dvl1

0.967

fundc1

0.961

LOC101173532

0.961

LOC101156432

0.955

ctnnb1

0.917

LOC101171502

0.906

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC101155859	LOC101156432	ENSORLP00000002594	ENSORLP00000008492	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Zgc:86598; Belongs to the protein kinase superfamily.	0.989
LOC101155859	LOC101163644	ENSORLP00000002594	ENSORLP00000000087	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.989
LOC101155859	LOC101171502	ENSORLP00000002594	ENSORLP00000004535	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Uncharacterized protein.	0.914
LOC101155859	LOC101173532	ENSORLP00000002594	ENSORLP00000043618	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	FUN14 domain containing 1.	0.954
LOC101155859	LOC101175345	ENSORLP00000002594	ENSORLP00000008637	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.900
LOC101155859	ctnnb1	ENSORLP00000002594	ENSORLP00000031608	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Catenin (cadherin-associated protein), beta 1.	0.926
LOC101155859	dvl1	ENSORLP00000002594	ENSORLP00000042468	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Dishevelled segment polarity protein 1a.	0.952
LOC101155859	dvl2	ENSORLP00000002594	ENSORLP00000026771	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Dishevelled segment polarity protein 2.	0.952
LOC101155859	dvl3	ENSORLP00000002594	ENSORLP00000017708	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Dishevelled segment polarity protein 3a.	0.952
LOC101155859	fundc1	ENSORLP00000002594	ENSORLP00000017245	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	Uncharacterized protein.	0.954
LOC101156432	LOC101155859	ENSORLP00000008492	ENSORLP00000002594	Zgc:86598; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.989
LOC101156432	LOC101163644	ENSORLP00000008492	ENSORLP00000000087	Zgc:86598; Belongs to the protein kinase superfamily.	Casein kinase 2, alpha prime polypeptide a; Belongs to the protein kinase superfamily.	0.955
LOC101156432	LOC101171502	ENSORLP00000008492	ENSORLP00000004535	Zgc:86598; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.906
LOC101156432	LOC101173532	ENSORLP00000008492	ENSORLP00000043618	Zgc:86598; Belongs to the protein kinase superfamily.	FUN14 domain containing 1.	0.965
LOC101156432	LOC101175345	ENSORLP00000008492	ENSORLP00000008637	Zgc:86598; Belongs to the protein kinase superfamily.	Casein kinase II subunit beta; Plays a complex role in regulating the basal catalytic activity of the alpha subunit; Belongs to the casein kinase 2 subunit beta family.	0.989
LOC101156432	ctnnb1	ENSORLP00000008492	ENSORLP00000031608	Zgc:86598; Belongs to the protein kinase superfamily.	Catenin (cadherin-associated protein), beta 1.	0.917
LOC101156432	dvl1	ENSORLP00000008492	ENSORLP00000042468	Zgc:86598; Belongs to the protein kinase superfamily.	Dishevelled segment polarity protein 1a.	0.971
LOC101156432	dvl2	ENSORLP00000008492	ENSORLP00000026771	Zgc:86598; Belongs to the protein kinase superfamily.	Dishevelled segment polarity protein 2.	0.967
LOC101156432	dvl3	ENSORLP00000008492	ENSORLP00000017708	Zgc:86598; Belongs to the protein kinase superfamily.	Dishevelled segment polarity protein 3a.	0.967
LOC101156432	fundc1	ENSORLP00000008492	ENSORLP00000017245	Zgc:86598; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.965