Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ptp4a1Protein tyrosine phosphatase 4A1. (173 aa)    
Predicted Functional Partners:
rabggtb
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
    
  0.932
aup1
AUP1 lipid droplet regulating VLDL assembly factor.
    
 
 0.726
LOC101170239
Death effector domain containing.
      
 0.677
cnot3
CCR4-NOT transcription complex, subunit 3a.
      
 0.657
slc25a14
Solute carrier family 25 member 14; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.653
CNNM1
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.651
CNNM1-2
Cyclin and CBS domain divalent metal cation transport mediator 1.
    
 
 0.651
SLC35A4
Solute carrier family 35 member A4.
      
 0.636
LOC101170494
Myc target 1b.
      
 0.603
CXorf40A
Chromosome X open reading frame 40A.
    
   0.600
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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