STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC111946846Cathepsin D; Belongs to the peptidase A1 family. (396 aa)    
Predicted Functional Partners:
LOC101168958
Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.
  
  
 
0.901
ctsz
Cathepsin Z; Belongs to the peptidase C1 family.
   
 0.807
ctsb
Cathepsin Ba; Belongs to the peptidase C1 family.
   
 0.731
LOC101165526
Cathepsin Bb; Belongs to the peptidase C1 family.
   
 0.721
LOC101165175
Cathepsin S, ortholog2, tandem duplicate 1; Belongs to the peptidase C1 family.
   
 0.673
agt
Angiotensinogen; Belongs to the serpin family.
   
 0.671
LOC101165300
Uncharacterized protein.
     
 0.666
LOC101159503
BH4_2 domain-containing protein.
     
 0.666
ctss
Cathepsin S; Belongs to the peptidase C1 family.
   
 0.664
LOC101172600
Baculoviral IAP repeat containing 2.
    
  0.653
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.