STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
otud3OTU deubiquitinase 3. (356 aa)    
Predicted Functional Partners:
mrpl32
Mitochondrial ribosomal protein L32.
  
 
 0.933
mrps9
Mitochondrial ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
 
 0.926
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
   
 
 0.925
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
   
 
 0.925
rps11
Ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
   
 
 0.925
rps3
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
   
 
 0.924
rps18
Ribosomal protein S18.
    
 
 0.922
mrpl20
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.914
Mrps6
Mitochondrial ribosomal protein S6.
   
 
 0.912
Rpl35
Ribosomal protein L35.
    
 
 0.880
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.