STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
H2L3P1_ORYLAExtracellular matrix protein 1a. (122 aa)    
Predicted Functional Partners:
slc39a13
Solute carrier family 39 member 13.
      
 0.558
ddx52
DEAD (Asp-Glu-Ala-Asp) box polypeptide 52.
      
 0.558
zbtb44
Zinc finger and BTB domain containing 44.
    
 
 0.529
mrps14
Mitochondrial ribosomal protein S14.
      
 0.489
zswim8
Zinc finger, SWIM-type containing 8.
      
 0.489
bms1
BMS1 ribosome biogenesis factor.
      
 0.487
LOC101159038
TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
      
 0.454
timp3
NTR domain-containing protein.
     
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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