STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
angptl7Angiopoietin-like 7. (340 aa)    
Predicted Functional Partners:
tie1
Tyrosine kinase with immunoglobulin-like and EGF-like domains 1.
   
 0.824
col22a1
Collagen, type XXII, alpha 1.
    
 0.547
Col5a2
Collagen, type V, alpha 2a.
   
 
 0.536
col12a1
Collagen, type XII, alpha 1a.
   
 
 0.521
itgbl1
Integrin, beta-like 1.
    
 0.505
dpysl5
Dihydropyrimidinase like 5b.
      
 0.487
mmp9
Uncharacterized protein.
    
 0.457
irf8
Interferon regulatory factor 8.
   
 
 0.428
kansl2
KAT8 regulatory NSL complex subunit 2.
    
 0.408
LOC101164744
Uncharacterized protein.
     
 0.402
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.