STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
iqubIQ motif and ubiquitin domain containing. (619 aa)    
Predicted Functional Partners:
armc3
Armadillo repeat containing 3.
   
 
 0.741
efcab1
EF-hand calcium binding domain 1.
   
 0.713
armc4
Armadillo repeat containing 4.
  
 
 0.694
c9h9orf116
Uncharacterized protein.
    
 
 0.667
Dnali1
Dynein, axonemal, light intermediate chain 1.
   
 
 0.594
ccdc96
DUF4201 domain-containing protein.
   
 
 0.574
LOC101170979
Uncharacterized protein.
      
 0.560
LOC101173946
Uncharacterized protein.
   
  
 0.558
LOC101175526
Radial spoke head 3.
   
 
 0.537
tab3
TGF-beta activated kinase 1 (MAP3K7) binding protein 3.
    
 0.486
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.