STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170667Uncharacterized protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (324 aa)    
Predicted Functional Partners:
cyp26a1
Cytochrome P450 26A1; Belongs to the cytochrome P450 family.
   
 
 0.948
aldh1a2
Retinaldehyde dehydrogenase type2; Belongs to the aldehyde dehydrogenase family.
  
 0.944
rdh5
Retinol dehydrogenase 5 (11-cis/9-cis); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
0.931
LOC101157281
Cytochrome P450, family 27, subfamily C, polypeptide 1; Belongs to the cytochrome P450 family.
   
 
 0.919
LOC101158747
LRAT domain-containing protein.
   
 
 0.917
LOC101162811
Lecithin retinol acyltransferase a.
   
 
 0.917
LOC105356312
Lecithin retinol acyltransferase b, tandem duplicate 1.
   
 
 0.917
rpe65
Retinoid isomerohydrolase RPE65 a.
   
 
 0.907
LOC101163729
Retinoid isomerohydrolase RPE65 b.
   
 
 0.907
aox1
Aldehyde oxidase beta.
     
 0.906
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.