STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101167110GATA zinc finger domain containing 2Ab. (651 aa)    
Predicted Functional Partners:
rbbp4
Retinoblastoma binding protein 4.
   
 0.905
LOC101156710
Retinoblastoma binding protein 4, like.
   
 0.905
LOC101174845
Chromodomain helicase DNA binding protein 4a.
   
 0.849
LOC101167742
Chromodomain helicase DNA binding protein 3.
   
 0.849
chd5
Uncharacterized protein.
   
 0.849
chd4
Uncharacterized protein.
   
 0.849
mta3
Metastasis associated 1 family, member 3.
   
 0.847
mta1
Metastasis associated 1.
   
 0.847
mta2
Metastasis associated 1 family, member 2.
   
 0.847
LOC101172482
Methyl-CpG binding domain protein 3a.
   
 0.814
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.