STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163512CDC42 effector protein (Rho GTPase binding) 3. (341 aa)    
Predicted Functional Partners:
H2M6P8_ORYLA
CDC42 effector protein (Rho GTPase binding) 5.
     
0.711
Rhoh
Ras homolog family member H.
    
 0.661
rhoq
Ras homolog family member Q.
    
 0.661
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
      
 0.658
LOC101165595
Zgc:109889.
      
 0.531
mapkapk5
MAPK activated protein kinase 5.
   
 
  0.488
LOC101157123
Transmembrane protein 51b.
      
 0.442
LOC101156249
Transmembrane protein 51a.
      
 0.442
LOC101167870
CDC42 effector protein (Rho GTPase binding) 4a.
     
0.430
cdc42ep4
CDC42 effector protein (Rho GTPase binding) 4b.
     
0.430
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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