Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC101163512CDC42 effector protein (Rho GTPase binding) 3. (341 aa)    
Predicted Functional Partners:
H2M6P8_ORYLA
CDC42 effector protein (Rho GTPase binding) 5.
     
 0.802
LOC101165595
Zgc:109889.
      
 0.694
Rhoh
Ras homolog family member H.
    
 0.669
rhoq
Ras homolog family member Q.
    
 0.669
cdc42se1
CRIB domain-containing protein.
      
 0.604
mapk6
Mitogen-activated protein kinase 6.
     
  0.581
mapkapk5
MAPK activated protein kinase 5.
     
  0.581
arl13b
ADP-ribosylation factor-like 13b.
     
  0.521
Vamp3
Vesicle-associated membrane protein 3 (cellubrevin).
     
  0.521
lamtor1
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 1.
     
  0.521
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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