ncan protein (Oryzias latipes) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ncan

Neurocan b. (1319 aa)

Predicted Functional Partners:

LOC101174621

0.864

bcan

0.864

H2M0K9_ORYLA

0.755

ptprz1

0.755

ENSORLP00000045191

0.755

efcc1

0.754

LOC105355636

0.722

omg

0.722

trpc1

0.715

LOC110017390

0.696

Your Current Organism:

Oryzias latipes

NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSORLP00000045191	H2M0K9_ORYLA	ENSORLP00000045191	ENSORLP00000011933	Tyrosine-protein phosphatase domain-containing protein.	Uncharacterized protein.	0.899
ENSORLP00000045191	LOC101174621	ENSORLP00000045191	ENSORLP00000019573	Tyrosine-protein phosphatase domain-containing protein.	Brevican.	0.751
ENSORLP00000045191	bcan	ENSORLP00000045191	ENSORLP00000026935	Tyrosine-protein phosphatase domain-containing protein.	Uncharacterized protein.	0.751
ENSORLP00000045191	ncan	ENSORLP00000045191	ENSORLP00000001026	Tyrosine-protein phosphatase domain-containing protein.	Neurocan b.	0.755
H2M0K9_ORYLA	ENSORLP00000045191	ENSORLP00000011933	ENSORLP00000045191	Uncharacterized protein.	Tyrosine-protein phosphatase domain-containing protein.	0.899
H2M0K9_ORYLA	LOC101174621	ENSORLP00000011933	ENSORLP00000019573	Uncharacterized protein.	Brevican.	0.751
H2M0K9_ORYLA	bcan	ENSORLP00000011933	ENSORLP00000026935	Uncharacterized protein.	Uncharacterized protein.	0.751
H2M0K9_ORYLA	ncan	ENSORLP00000011933	ENSORLP00000001026	Uncharacterized protein.	Neurocan b.	0.755
LOC101174621	ENSORLP00000045191	ENSORLP00000019573	ENSORLP00000045191	Brevican.	Tyrosine-protein phosphatase domain-containing protein.	0.751
LOC101174621	H2M0K9_ORYLA	ENSORLP00000019573	ENSORLP00000011933	Brevican.	Uncharacterized protein.	0.751
LOC101174621	LOC105355636	ENSORLP00000019573	ENSORLP00000027182	Brevican.	LRRNT domain-containing protein.	0.727
LOC101174621	ncan	ENSORLP00000019573	ENSORLP00000001026	Brevican.	Neurocan b.	0.864
LOC101174621	omg	ENSORLP00000019573	ENSORLP00000037029	Brevican.	Oligodendrocyte myelin glycoprotein b.	0.727
LOC101174621	ptprz1	ENSORLP00000019573	ENSORLP00000023960	Brevican.	Protein tyrosine phosphatase receptor type Z1a.	0.751
LOC105355636	LOC101174621	ENSORLP00000027182	ENSORLP00000019573	LRRNT domain-containing protein.	Brevican.	0.727
LOC105355636	bcan	ENSORLP00000027182	ENSORLP00000026935	LRRNT domain-containing protein.	Uncharacterized protein.	0.727
LOC105355636	ncan	ENSORLP00000027182	ENSORLP00000001026	LRRNT domain-containing protein.	Neurocan b.	0.722
LOC110017390	efcc1	ENSORLP00000017038	ENSORLP00000016560	Potassium voltage-gated channel, subfamily G, member 2; Belongs to the potassium channel family.	EF-hand and coiled-coil domain containing 1.	0.687
LOC110017390	ncan	ENSORLP00000017038	ENSORLP00000001026	Potassium voltage-gated channel, subfamily G, member 2; Belongs to the potassium channel family.	Neurocan b.	0.696
LOC110017390	trpc1	ENSORLP00000017038	ENSORLP00000012751	Potassium voltage-gated channel, subfamily G, member 2; Belongs to the potassium channel family.	Transient receptor potential cation channel, subfamily C, member 1; Belongs to the transient receptor (TC 1.A.4) family.	0.630