STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101158611VEFS-Box domain-containing protein. (735 aa)    
Predicted Functional Partners:
eed
Embryonic ectoderm development protein.
   
 0.999
ezh2
Uncharacterized protein.
   
 0.993
ezh1
Uncharacterized protein.
   
 0.993
rbbp4
Retinoblastoma binding protein 4.
   
 0.992
LOC101156710
Retinoblastoma binding protein 4, like.
   
 0.992
AEBP2
AE binding protein 2.
    
 0.991
LOC101173755
Uncharacterized protein.
    
 0.991
jarid2
Jumonji, AT rich interactive domain 2b.
    
 0.978
LOC101161417
Ash1 (absent, small, or homeotic)-like (Drosophila).
    
 0.939
pbrm1
Polybromo 1.
   
 
 0.903
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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