STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SCARF2Scavenger receptor class F member 2. (935 aa)    
Predicted Functional Partners:
slc7a4
Solute carrier family 7 member 4.
    
 0.648
dgcr2
DiGeorge syndrome critical region gene 2.
    
 0.596
klhl22
Kelch-like family member 22.
      
 0.588
p2rx4
P2X purinoceptor; Receptor for ATP that acts as a ligand-gated ion channel.
      
 0.508
LOC101157309
Slc25a1 solute carrier family 25 member 1b; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.498
slc25a1
Si:dkey-178e17.1; Belongs to the mitochondrial carrier (TC 2.A.29) family.
      
 0.498
gins2
DNA replication complex GINS protein PSF2; Belongs to the GINS2/PSF2 family.
      
 0.498
serpind1
Serpin peptidase inhibitor, clade D (heparin cofactor), member 1; Belongs to the serpin family.
      
 0.462
snap29
Synaptosome associated protein 29.
      
 0.462
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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