STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101163086Zgc:112294. (216 aa)    
Predicted Functional Partners:
tmem231
Transmembrane protein 231.
    
 
 0.566
b9d1
B9 protein domain 1.
    
 
 0.517
nphp1
Nephronophthisis 1.
      
 0.505
tmem67
Transmembrane protein 67.
      
 0.491
B9d2
B9 domain containing 2.
    
 
 0.473
nphp4
Uncharacterized protein.
      
 0.472
drc7
Uncharacterized protein.
      
 0.452
LOC101169939
RPGRIP1 like.
      
 0.451
TMEM216
Transmembrane protein 216.
   
  
 0.432
LOC101166111
Transmembrane protein 237b.
   
  
 0.404
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: high (92%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.