Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC101170450H2A histone family, member Y; Belongs to the histone H2A family. (369 aa)    
Predicted Functional Partners:
parp1
Poly [ADP-ribose] polymerase; Poly-ADP-ribosyltransferase that mediates poly-ADP- ribosylation of proteins and plays a key role in DNA repair.
   
 
 0.832
xrcc6
X-ray repair complementing defective repair in Chinese hamster cells 6.
    
 0.775
glyr1
Glyoxylate reductase 1 homolog (Arabidopsis).
   
   0.761
LOC101155571
Histone H2B; Belongs to the histone H2B family.
   
 0.759
LOC101155571-2
Histone H2B 1/2.
   
 0.759
ENSORLP00000038070
Zgc:171759; Belongs to the histone H2B family.
   
 0.759
LOC101155571-3
Histone H2B 1/2.
   
 0.759
LOC101155571-4
Histone H2B 1/2.
   
 0.759
ENSORLP00000045626
Histone H2B; Belongs to the histone H2B family.
   
 0.759
bard1
BRCA1 associated RING domain 1.
   
 0.754
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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