Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
glaAlpha-galactosidase. (427 aa)    
Predicted Functional Partners:
glb1
Beta-galactosidase.
  
 
 0.970
galc
Galactosylceramidase b.
     
 0.944
hexb
Beta-hexosaminidase.
   
 
 0.937
LOC101172329
Beta-hexosaminidase.
   
 
 0.937
arsa
Arylsulfatase A.
   
 
 0.937
galm
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
     
 0.936
gaa
Glucosidase, alpha; acid (Pompe disease, glycogen storage disease type II); Belongs to the glycosyl hydrolase 31 family.
     
 0.916
si
Uncharacterized protein.
     
 0.916
LOC101169174
Si:ch73-12o23.1; Belongs to the glycosyl hydrolase 31 family.
     
 0.916
LOC101157021
Glucosidase, alpha; neutral C; Belongs to the glycosyl hydrolase 31 family.
     
 0.916
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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