STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem104Transmembrane protein 104. (491 aa)    
Predicted Functional Partners:
nat9
N-acetyltransferase 9 (GCN5-related, putative).
      
 0.846
sytl5
Synaptotagmin-like 5.
      
 0.840
wdr54
WD repeat domain 54.
      
 0.695
wdr53
WD repeat domain 53.
      
 0.691
ntrk3
Tyrosine-protein kinase receptor.
      
 0.620
ENSORLP00000035584
Ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
      
 0.617
antkmt
Family with sequence similarity 173 member A.
      
 0.613
unc93a
Unc-93 homolog A.
      
 0.607
ptch1
Patched 1.
      
 0.594
supv3l1
SUV3-like helicase.
      
 0.545
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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