Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
nudcd3NudC domain containing 3. (342 aa)    
Predicted Functional Partners:
LOC101155771
PPP1R35_C domain-containing protein.
      
 0.902
kbtbd4
Kelch repeat and BTB (POZ) domain containing 4.
    
   0.884
KLHL28
Kelch like family member 28.
    
 
 0.768
gtpbp1
GTP binding protein 1.
      
 0.761
klhl14
Kelch-like family member 14.
    
   0.759
pigt
Phosphatidylinositol glycan anchor biosynthesis, class T.
      
 0.748
ubfd1
Ubiquitin family domain containing 1.
   
  
 0.738
nagpa
N-acetylglucosamine-1-phosphodiester alpha-N-acetylglucosaminidase.
      
 0.717
enc1
Ectodermal-neural cortex 1.
    
   0.704
LOC101174902
Ectodermal-neural cortex 3.
    
   0.704
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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