Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pcdh19Protocadherin 19. (1088 aa)    
Predicted Functional Partners:
LOC101163425
Syntaxin binding protein 1a; Belongs to the STXBP/unc-18/SEC1 family.
      
 0.608
eno4
Enolase 4.
   
  
 0.511
LOC101162070
Sodium channel, voltage-gated, type I, beta a.
      
 0.475
Depdc5
Uncharacterized protein.
      
 0.464
CDKL5
Cyclin dependent kinase like 5.
      
 0.462
LOC101174816
Cyclin-dependent kinase-like 5.
      
 0.462
glul
Glutamine synthetase.
   
  
 0.453
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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