STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101168358Transmembrane 6 superfamily member 2. (381 aa)    
Predicted Functional Partners:
u2af2
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
    
 0.831
rbm17
RNA binding motif protein 17.
   
 
 0.766
mboat7
Membrane bound O-acyltransferase domain containing 7; Belongs to the membrane-bound acyltransferase family.
      
 0.752
fdft1
Farnesyl-diphosphate farnesyltransferase 1.
      
 0.646
dhx9
DEAH (Asp-Glu-Ala-His) box helicase 9.
    
  0.640
LOC101155132
HIV-1 Tat specific factor 1.
     
 0.593
LOC101169310
DEAH (Asp-Glu-Ala-His) box polypeptide 32b.
    
 0.578
sf1
Splicing factor 1.
   
 0.578
LOC101170859
DEAQ box RNA-dependent ATPase 1.
    
 0.578
DHX15
Uncharacterized protein.
    
 0.578
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.