Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
COL14A1Collagen type XIV alpha 1 chain. (1869 aa)    
Predicted Functional Partners:
H2MFT6_ORYLA
Uncharacterized protein.
    
   0.488
Col27a1
LAM_G_DOMAIN domain-containing protein.
     
 0.487
LOC101162553
Collagen, type VI, alpha 2.
  
0.481
lamc3
Laminin, gamma 3.
   
 0.454
H2MLS6_ORYLA
RING-type domain-containing protein.
    
 0.450
rptor
Regulatory associated protein of MTOR, complex 1.
    
 
 0.449
arhgef25
Rho guanine nucleotide exchange factor (GEF) 25b.
     
 0.438
ARHGEF25
Uncharacterized protein.
     
 0.438
ENSORLP00000029534
FYVE, RhoGEF and PH domain containing 1.
      
 0.427
arhgef6
Rac/Cdc42 guanine nucleotide exchange factor (GEF) 6.
      
 0.427
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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