STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NogNoggin; Belongs to the noggin family. (229 aa)    
Predicted Functional Partners:
bmp2
TGF_BETA_2 domain-containing protein.
    
 0.963
bmp4
Bone morphogenetic protein 4.
    
 0.954
LOC101163346
Bone morphogenetic protein 16.
    
 0.945
LOC101160897
Bone morphogenetic protein 7a.
    
 0.943
bmp5
Bone morphogenetic protein 5.
    
 0.917
bmp6
Bone morphogenetic protein 6.
    
 0.915
H2LSA7_ORYLA
Noggin; Belongs to the noggin family.
  
  
0.906
LOC101173146
Bone morphogenetic protein 7b.
    
 0.905
gdf5
Growth differentiation factor 5.
    
 0.845
LOC101171064
Growth differentiation factor 6a.
    
 0.845
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.