STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctnnbl1Catenin, beta like 1. (578 aa)    
Predicted Functional Partners:
prpf19
Pre-mRNA processing factor 19.
   
 0.999
cwc15
CWC15 spliceosome associated protein homolog.
    
 0.999
cdc5l
CDC5 cell division cycle 5-like (S. pombe).
   
 0.999
plrg1
Pleiotropic regulator 1.
   
 0.998
bcas2
BCAS2 pre-mRNA processing factor.
   
 0.998
wbp11
WW domain binding protein 11.
    
 0.992
bud31
BUD31 homolog.
    
 
 0.967
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.949
snw1
SNW domain containing 1.
   
 
 0.945
pqbp1
Polyglutamine binding protein 1.
   
 
 0.943
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
Server load: low (36%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.