STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101155449Uncharacterized protein. (920 aa)    
Predicted Functional Partners:
vcl
Vinculin b.
   
 0.966
LOC101172101
Vinculin a.
   
 0.966
LOC101168921
Actin, cytoplasmic 1, N-terminally processed; Actin is a highly conserved protein that polymerizes to produce filaments that form cross-linked networks in the cytoplasm of cells. Actin exists in both monomeric (G-actin) and polymeric (F-actin) forms, both forms playing key functions, such as cell motility and contraction. In addition to their role in the cytoplasmic cytoskeleton, G- and F-actin also localize in the nucleus, and regulate gene transcription and motility and repair of damaged DNA.
   
 0.949
ctnna1
Catenin (cadherin-associated protein), alpha 1.
   
 0.932
ctnna2
Catenin (cadherin-associated protein), alpha 2.
   
 0.932
zyx
Uncharacterized protein.
   
 0.930
magi1
Membrane associated guanylate kinase, WW and PDZ domain containing 1b.
    
 0.917
LOC101168460
Membrane associated guanylate kinase, WW and PDZ domain containing 1a.
    
 0.917
LOC101158422
Mical-like 2b.
    
0.912
lmo7
LIM domain 7a.
    
 0.907
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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