STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf341Zinc finger protein 341. (812 aa)    
Predicted Functional Partners:
H2MVY4_ORYLA
Capping protein regulator and myosin 1 linker 2.
      
 0.719
LOC101164686
OTU deubiquitinase with linear linkage specificity a.
    
 
 0.695
mybpc1
Myosin binding protein C, slow type.
   
 0.627
TCERG1
Transcription elongation regulator 1.
    
 
 0.601
LOC101163559
Uncharacterized protein.
      
 0.582
tsnaxip1
TSNAXIP1_N domain-containing protein.
   
 0.541
LOC101157969
Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.
    
 0.523
LOC101170771
Uncharacterized protein.
      
 0.519
carmil1
Uncharacterized protein.
      
 0.519
pxmp4
Peroxisomal membrane protein 4; Belongs to the peroxisomal membrane protein PXMP2/4 family.
      
 0.518
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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