STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101173626Copine VIII. (568 aa)    
Predicted Functional Partners:
sergef
Secretion regulating guanine nucleotide exchange factor.
   
  
 0.784
tbc1d15
TBC1 domain family, member 15.
      
 0.754
LOC101163972
Upper zone of growth plate and cartilage matrix associated b.
      
 0.738
zfc3h1
Uncharacterized protein.
      
 0.732
H2LM76_ORYLA
Fin bud initiation factor a.
      
 0.730
LOC101167616
Usher syndrome 1C.
      
 0.722
LOC101156484
Tetraspanin.
      
 0.694
LOC105358663
Anoctamin.
      
 0.686
LOC101170482
Anoctamin.
      
 0.686
ENSORLP00000044836
Anoctamin.
      
 0.686
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.