STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
skp1S-phase kinase-associated protein 1; Belongs to the SKP1 family. (163 aa)    
Predicted Functional Partners:
cul1
Cullin 1b; Belongs to the cullin family.
   
 0.999
kdm2a
Lysine (K)-specific demethylase 2Ab.
   
 0.999
LOC101163098
Lysine (K)-specific demethylase 2Bb.
   
 0.999
LOC101171056
Lysine (K)-specific demethylase 2Aa.
   
 0.999
skp2
S-phase kinase-associated protein 2, E3 ubiquitin protein ligase.
   
 0.999
LOC101161646
Lysine (K)-specific demethylase 2Ba.
   
 0.999
LOC101161462
Uncharacterized protein.
   
 0.999
H2MG95_ORYLA
Ring-box 1, E3 ubiquitin protein ligase.
   
 0.998
LOC101162015
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha a.
   
 0.994
nfkbia
Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha b.
   
 0.994
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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