STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC101160301Amino acid transporter. (527 aa)    
Predicted Functional Partners:
LOC101157800
Proteolipid protein 1b.
   
 
 0.710
LOC101171500
Proteolipid protein 1a.
   
 
 0.710
glul
Glutamine synthetase.
   
  
 0.659
slc7a5
Solute carrier family 7 member 5.
   
 
 0.606
LOC101154797
Solute carrier family 7 member 1a.
   
 
 0.557
dbt
Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex.
    
 0.549
ncan
Neurocan b.
   
    0.513
slc38a8
Solute carrier family 38 member 8a.
      
 0.505
cltrn
Si:dkey-194e6.1.
      
 0.503
slc7a7
Solute carrier family 7 member 7.
   
 
 0.489
Your Current Organism:
Oryzias latipes
NCBI taxonomy Id: 8090
Other names: Japanese medaka, Japanese rice fish, O. latipes, Poecilia latipes, medaka
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.